This threads typed hook settings through runtime config, adds a shell-based hook runner, and executes PreToolUse/PostToolUse around each tool call in the conversation loop. The CLI now rebuilds runtimes with settings-derived hook configuration so user-defined Claude hook commands actually run before and after tools.
Constraint: Hook behavior needed to match Claude-style settings.json hooks without broad plugin/MCP parity work in this change
Rejected: Delay hook loading to the tool executor layer | would miss denied tool calls and duplicate runtime policy plumbing
Confidence: medium
Scope-risk: moderate
Reversibility: clean
Directive: Keep hook execution in the runtime loop so permission decisions and tool results remain wrapped by the same conversation semantics
Tested: cargo test; cargo build --release
Not-tested: Real user hook scripts outside the test harness; broader plugin/skills parity
Extended thinking needed to travel end-to-end through the API,
runtime, and CLI so the client can request a thinking budget,
preserve streamed reasoning blocks, and present them in a
collapsed text-first form. The implementation keeps thinking
strictly opt-in, adds a session-local toggle, and reuses the
existing flag/slash-command/reporting surfaces instead of
introducing a new UI layer.
Constraint: Existing non-thinking text/tool flows had to remain backward compatible by default
Constraint: Terminal UX needed a lightweight collapsed representation rather than an interactive TUI widget
Rejected: Heuristic CLI-only parsing of reasoning text | brittle against structured stream payloads
Rejected: Expanded raw thinking output by default | too noisy for normal assistant responses
Confidence: medium
Scope-risk: moderate
Reversibility: clean
Directive: Keep thinking blocks structurally separate from answer text unless the upstream API contract changes
Tested: cargo fmt --all; cargo clippy --workspace --all-targets -- -D warnings; cargo test -q
Not-tested: Live upstream thinking payloads against the production API contract
This change makes compaction summaries durable under .claude/memory,
feeds those saved memory files back into prompt context, updates /memory
to report both instruction and project-memory files, and moves TodoWrite
persistence to a human-readable .claude/todos.md file.
Constraint: Reuse existing compaction, prompt loading, and slash-command plumbing rather than add a new subsystem
Constraint: Keep persisted project state under Claude-local .claude/ paths
Rejected: Introduce a dedicated memory service module | larger diff with no clear user benefit for this task
Confidence: high
Scope-risk: moderate
Reversibility: clean
Directive: Project memory files are loaded as prompt context, so future format changes must preserve concise readable content
Tested: cargo fmt --all --manifest-path rust/Cargo.toml
Tested: cargo clippy --manifest-path rust/Cargo.toml --all-targets --all-features -- -D warnings
Tested: cargo test --manifest-path rust/Cargo.toml --all
Not-tested: Long-term retention/cleanup policy for .claude/memory growth
The Rust CLI/runtime now models permissions as ordered access levels, derives tool requirements from the shared tool specs, and prompts REPL users before one-off danger-full-access escalations from workspace-write sessions. This also wires explicit --permission-mode parsing and makes /permissions operate on the live session state instead of an implicit env-derived default.
Constraint: Must preserve the existing three user-facing modes read-only, workspace-write, and danger-full-access
Constraint: Must avoid new dependencies and keep enforcement inside the existing runtime/tool plumbing
Rejected: Keep the old Allow/Deny/Prompt policy model | could not represent ordered tool requirements across the CLI surface
Rejected: Continue sourcing live session mode solely from RUSTY_CLAUDE_PERMISSION_MODE | /permissions would not reliably reflect the current session state
Confidence: high
Scope-risk: moderate
Reversibility: clean
Directive: Add required_permission entries for new tools before exposing them to the runtime
Tested: cargo fmt; cargo clippy --workspace --all-targets -- -D warnings; cargo test -q
Not-tested: Manual interactive REPL approval flow in a live Anthropic session
